This is a mostly vibe-coded web interface for AMRFinderPlus created as a personal side-project. As far as I can tell everything works well, but there is no warranty that this will do what you want. A brief description of the options is below, and results can be downloaded in the native tab-delimited format output by AMRFinderPlus.
Right now it seems to be working quickly and easily with results coming in a minute or two at most. However, I haven't stress tested it, so performance under load is still unknown.
Runs AMRFinderPlus with the following options: `--plus` and `--print_node`
A user-defined name to help you identify and organize your analysis results. This name will appear on the results page and in the output filenames.
-n, --nucleotide)An assembled nucleotide FASTA file to search.
See the official documentation for Input FASTA files.
-p, --protein)A protein FASTA file to search.
See the official documentation for Input FASTA files.
-g, --gff)A GFF3 format file containing gene annotations. This file provides the genomic coordinates and identifiers for the genes in the nucleotide sequence. If you provide a GFF file, you should also provide the corresponding nucleotide and protein files to enable full AMRFinderPlus functionality.
See the official documentation for GFF files.
--annotation_format)Specifies the software or pipeline used to generate the gene annotations (GFF and protein files). This is essential for AMRFinderPlus to correctly parse the sequence headers and coordinates when both Protein and Nucleotide files are provided (the recommended way to run AMRFinderPlus). Supported formats include:
The official documentation for the --annotation_format option contains more information.
-O, --organism)Specifies the taxonomic group of the organism being analyzed (e.g., Escherichia, Salmonella, Staphylococcus aureus). Providing an organism group allows AMRFinderPlus to use organism-specific curated thresholds and search for known point mutations that confer resitance
If "None" is selected, AMRFinderPlus will only perform a general search against its core database.
See the official documentation for the --organism option.
Currently, this server has a 10 MB file size limit for each upload. This tool is designed to analyze one bacterial genome at a time. Larger submissions or multiple genomes may fail or be rejected.